Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7BOB

Exo-beta-1,4-mannosidase Op5Man5 from Opitutaceae bacterium strain TAV5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2017-10-20
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.826561
Spacegroup nameP 21 21 21
Unit cell lengths102.140, 162.450, 168.180
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.867 - 2.200
R-factor0.2013
Rwork0.201
R-free0.22730
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Cryo-EM model (3.7 A)
RMSD bond length0.008
RMSD bond angle0.913
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX (1.15.2-3472)
Refinement softwarePHENIX (1.15.2-3472)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.1502.280
High resolution limit [Å]2.2002.200
Number of reflections14166417459
<I/σ(I)>11.91.3
Completeness [%]99.799.4
Redundancy13.312.6
CC(1/2)0.9990.768
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.22930.1 M phosphorus citrate (pH 4.2), 30 % (v/v) ethanol, and 5 % (w/v) polyethylene glycol 1000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon