7BOB
Exo-beta-1,4-mannosidase Op5Man5 from Opitutaceae bacterium strain TAV5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.826561 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 102.140, 162.450, 168.180 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.867 - 2.200 |
R-factor | 0.2013 |
Rwork | 0.201 |
R-free | 0.22730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Cryo-EM model (3.7 A) |
RMSD bond length | 0.008 |
RMSD bond angle | 0.913 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX (1.15.2-3472) |
Refinement software | PHENIX (1.15.2-3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.150 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Number of reflections | 141664 | 17459 |
<I/σ(I)> | 11.9 | 1.3 |
Completeness [%] | 99.7 | 99.4 |
Redundancy | 13.3 | 12.6 |
CC(1/2) | 0.999 | 0.768 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 293 | 0.1 M phosphorus citrate (pH 4.2), 30 % (v/v) ethanol, and 5 % (w/v) polyethylene glycol 1000 |