7BNT
Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with a predicted ancestral HMA domain of Pik-1 from Oryza spp.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-09 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9700 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 119.486, 119.486, 35.974 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.810 - 1.320 |
R-factor | 0.1472 |
Rwork | 0.145 |
R-free | 0.18390 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5a6w |
RMSD bond length | 0.011 |
RMSD bond angle | 1.590 |
Data reduction software | Aimless (0.7.4) |
Data scaling software | DIALS |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.810 | 59.810 | 1.340 |
High resolution limit [Å] | 1.320 | 7.230 | 1.320 |
Rmerge | 0.068 | 0.052 | 2.201 |
Rmeas | 0.070 | 0.055 | 2.285 |
Rpim | 0.018 | 0.015 | 0.605 |
Number of reflections | 59464 | 462 | 2862 |
<I/σ(I)> | 16.7 | ||
Completeness [%] | 96.3 | 99.7 | 94.1 |
Redundancy | 14.6 | 12.3 | 13.9 |
CC(1/2) | 0.999 | 0.998 | 0.730 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | NULL |