7BIZ
Structure of a B12 binding lipoprotein from Bacteroides thetaiotaomicron
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.96864 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 128.052, 128.052, 135.051 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 85.700 - 1.530 |
R-factor | 0.1662 |
Rwork | 0.165 |
R-free | 0.19160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | In-house structure |
RMSD bond length | 0.009 |
RMSD bond angle | 1.516 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (v1.18_3855) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 85.740 | 1.580 |
High resolution limit [Å] | 1.530 | 1.530 |
Number of reflections | 191916 | 19009 |
<I/σ(I)> | 0.9 | |
Completeness [%] | 100.0 | |
Redundancy | 10.8 | |
CC(1/2) | 0.990 | 0.582 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | Molecular dimensions. Morpheus condition B1 (0.1M Halogens (NaF, NaBr and NaI) 0.1M imidazole, 0.1 MES monohydrate acid pH6.5 and 30% precipitant mix 1 (40% v/v PEG500 MME, 20%W/V PEG 20000)) |