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7BIZ

Structure of a B12 binding lipoprotein from Bacteroides thetaiotaomicron

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-12
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.96864
Spacegroup nameP 31 2 1
Unit cell lengths128.052, 128.052, 135.051
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution85.700 - 1.530
R-factor0.1662
Rwork0.165
R-free0.19160
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)In-house structure
RMSD bond length0.009
RMSD bond angle1.516
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (v1.18_3855)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]85.7401.580
High resolution limit [Å]1.5301.530
Number of reflections19191619009
<I/σ(I)>0.9
Completeness [%]100.0
Redundancy10.8
CC(1/2)0.9900.582
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION293Molecular dimensions. Morpheus condition B1 (0.1M Halogens (NaF, NaBr and NaI) 0.1M imidazole, 0.1 MES monohydrate acid pH6.5 and 30% precipitant mix 1 (40% v/v PEG500 MME, 20%W/V PEG 20000))

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