7BBC
Joint X-ray/neutron room temperature structure of perdeuterated PLL lectin in complex with perdeuterated L-fucose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | Xenocs GeniX 3D Cu HF |
Temperature [K] | 293 |
Detector technology | IMAGE PLATE |
Collection date | 2020-01-15 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.542 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 72.665, 89.210, 159.235 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.990 - 2.200 |
Rwork | 0.191 |
R-free | 0.22110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5c9o |
RMSD bond length | 0.010 |
RMSD bond angle | 1.323 |
Data reduction software | LAUEGEN |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.000 | 2.320 | 1.880 |
High resolution limit [Å] | 1.840 | 2.200 | 1.840 |
Rmerge | 0.110 | 0.330 | 0.580 |
Number of reflections | 45276 | 2822 | 2766 |
<I/σ(I)> | 14.7 | ||
Completeness [%] | 100.0 | ||
Redundancy | 11.5 | ||
CC(1/2) | 1.000 | 0.830 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Na/K tartrate dissolved in D2O, soaked with 50 mM perdeuterated fucose-d12 dissolved in D2O | |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Na/K tartrate dissolved in D2O, soaked with 50 mM perdeuterated fucose-d12 dissolved in D2O |