7B4W
Broadly neutralizing DARPin bnD.3 in complex with the HIV-1 envelope variable loop 3 crown mimetic peptide V3-IF (BG505)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-08 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.00004 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.400, 67.060, 93.110 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.600 - 1.900 |
R-factor | 0.18316 |
Rwork | 0.181 |
R-free | 0.22732 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | in house model |
RMSD bond length | 0.014 |
RMSD bond angle | 1.787 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.420 | 1.950 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.105 | |
Rmeas | 0.121 | |
Number of reflections | 47910 | 3356 |
<I/σ(I)> | 8.09 | |
Completeness [%] | 99.6 | |
Redundancy | 3.944 | |
CC(1/2) | 0.996 | 0.682 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 277.15 | 0.2M Ca Acetate, 0.1 Na Acetate pH 5.5, 30% PEG 2K MME |