7AXM
Structure of SARS-CoV-2 Main Protease bound to Pelitinib
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-04-28 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.033 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 113.400, 53.200, 44.776 |
Unit cell angles | 90.00, 103.05, 90.00 |
Refinement procedure
Resolution | 26.600 - 1.400 |
R-factor | 0.1454 |
Rwork | 0.143 |
R-free | 0.20950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6nyq |
RMSD bond length | 0.010 |
RMSD bond angle | 1.172 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.600 | 1.450 |
High resolution limit [Å] | 1.400 | 1.400 |
Number of reflections | 50456 | 4883 |
<I/σ(I)> | 10.07 | |
Completeness [%] | 98.6 | |
Redundancy | 3.8 | |
CC(1/2) | 0.998 | 0.430 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 291 | 0.1 M MIB pH 7.5, 25% PEG1500, 5% DMSO |