7AMQ
Crystal structure of the complex of HuJovi-1 Fab with the human TRBC2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-15 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 114.510, 91.792, 123.393 |
Unit cell angles | 90.00, 94.62, 90.00 |
Refinement procedure
Resolution | 47.840 - 2.353 |
R-factor | 0.2032 |
Rwork | 0.201 |
R-free | 0.24910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6*** |
RMSD bond length | 0.008 |
RMSD bond angle | 1.050 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.11.7) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.840 | 2.430 |
High resolution limit [Å] | 2.350 | 2.350 |
Rmerge | 0.132 | 1.228 |
Number of reflections | 52746 | 4406 |
<I/σ(I)> | 8.3 | 1 |
Completeness [%] | 99.6 | 96.8 |
Redundancy | 5.1 | 4.3 |
CC(1/2) | 0.996 | 0.712 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 295 | Equimolar amounts of A6 TCR C2 and Fab were mixed in PBS to 10.4 mg/ml. 5% PEG 8000, 0.1M sodium cacodylate pH 7.4, 5 mM ZnCl2, 4% benzamidine HCl. Crystals from the Hu-Jovi1-TRBC1 complex were used as seeds. |