7AGM
Crystal structure of the N-acetylmuramyl-L-alanine amidase, Ami1, from Mycobacterium smegmatis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-03 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.850, 68.840, 63.720 |
Unit cell angles | 90.00, 91.87, 90.00 |
Refinement procedure
Resolution | 46.750 - 1.350 |
R-factor | 0.1571 |
Rwork | 0.156 |
R-free | 0.18060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7agl |
RMSD bond length | 0.005 |
RMSD bond angle | 0.769 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.600 | 1.390 |
High resolution limit [Å] | 1.350 | 1.350 |
Rmeas | 0.060 | 1.400 |
Number of reflections | 79198 | 8163 |
<I/σ(I)> | 15.1 | |
Completeness [%] | 100.0 | |
Redundancy | 6.6 | |
CC(1/2) | 0.990 | 0.600 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1 M Bis-Tris pH 5.5, 17% (w/v) PEG 3350 |