7AE8
Crystal structure of HEPN(R102A) toxin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-02 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.9797 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 61.896, 69.783, 81.506 |
Unit cell angles | 90.00, 107.01, 90.00 |
Refinement procedure
Resolution | 51.989 - 2.000 |
R-factor | 0.1716 |
Rwork | 0.169 |
R-free | 0.19450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7ae6 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.535 |
Data reduction software | XDS (VERSION Mar 15, 2019) |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP (11.0.02) |
Refinement software | PHENIX (1.12-2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 69.783 | 69.783 | 2.110 |
High resolution limit [Å] | 2.000 | 6.320 | 2.000 |
Rmerge | 0.040 | 0.403 | |
Rmeas | 0.069 | 0.042 | 0.431 |
Rpim | 0.019 | 0.012 | 0.117 |
Total number of observations | 18090 | 87506 | |
Number of reflections | 45032 | 1485 | 6555 |
<I/σ(I)> | 23.3 | 47.3 | 7.7 |
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 13.2 | 12.2 | 13.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 291 | Crystallization buffer was 0.2 M Ammonium acetate, 0.1 M Tris pH 8.0, 16% PEG10000 |