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7A22

Crystal structure of human protein kinase CK2alpha' (CSNK2A2 gene product) in complex with the ATP-competitive inhibitor 5,6,7-tribromo-1H-triazolo[4,5-b]pyridine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyPIXEL
Collection date2018-11-14
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.87313
Spacegroup nameP 1
Unit cell lengths46.501, 47.696, 50.571
Unit cell angles113.15, 90.46, 90.27
Refinement procedure
Resolution46.500 - 1.010
R-factor0.1382
Rwork0.138
R-free0.16600
Structure solution methodAB INITIO PHASING
RMSD bond length0.012
RMSD bond angle1.353
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareArcimboldo
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.5001.106
High resolution limit [Å]1.0081.008
Rmerge0.0710.991
Rmeas0.0771.114
Rpim0.0300.495
Number of reflections1491087455
<I/σ(I)>11.71.5
Completeness [%]70.8
Redundancy6.4
CC(1/2)0.9980.555
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293Reservoir composition: 28 % (w/v) PEG6000, 0.9 M LiCl, 0.1 M, Tris/HCl, pH 8.5; drop composition prior to equilibration: 0.01 ml reservoir solution + 0.02 ml CK2alpha' (mutant Cys336Ser)/inhibitor MB002 mixture (0.180 ml 6 mg/ml CK2alpha'Cys336Ser, 0.5 M NaCl, 25 mM Tris/HCl, pH 8.5, mixed and pre-equilibrated with 0.02 ml 10 mM MB002 in dimethyl sulfoxide); the initial inhibitor MB002 was replaced by the inhibitor 5,6,7-tribromo-1H-triazolo[4,5-b]pyridine by extensive crystal soaking.

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