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6A6L

Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA

Experimental procedure
実験手法SINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL18U1
Synchrotron siteSSRF
BeamlineBL18U1
Temperature [K]100
Detector technologyCCD
Collection date2018-04-04
DetectorADSC QUANTUM 315
Wavelength(s)0.97930
Spacegroup nameP 62
格子定数 [Å]66.380, 66.380, 34.702
格子定数 [度]90.00, 90.00, 120.00
精密化法
残基29.709 - 1.780
R因子0.1826
Rwork0.180
R-free0.20680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3pf5
結合長の平均二乗偏差(RMSD) [Å]0.006
結合角の平均二乗偏差(RMSD) [度]0.934
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.8.4_1496)
Quality characteristics
 OverallOuter shell
分解能 [Å] (低)30.0001.840
分解能 [Å] (高)1.7801.780
Rmerge_l_obs0.0700.191
独立反射数8518856
<I/σ(I)>67.973
完全性 [%]100.0
冗長性17.5
結晶化条件
結晶ID方法pH温度溶液条件
1VAPOR DIFFUSION, HANGING DROP2892.4M Ammonium sulfate

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件を2024-09-18に公開中

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