6ZZQ
Crystal structure of (R)-3-hydroxybutyrate dehydrogenase from Acinetobacter baumannii complexed with NAD+ and acetoacetate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 175 |
Detector technology | PIXEL |
Collection date | 2017-09-24 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 64.348, 64.348, 194.513 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 53.570 - 1.930 |
R-factor | 0.2117 |
Rwork | 0.209 |
R-free | 0.26510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2v2h |
RMSD bond length | 0.008 |
RMSD bond angle | 1.480 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.570 | 1.980 |
High resolution limit [Å] | 1.930 | 1.930 |
Rmerge | 0.141 | 3.014 |
Rmeas | 0.144 | |
Rpim | 0.029 | 0.759 |
Number of reflections | 18880 | 1344 |
<I/σ(I)> | 15.7 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 24.5 | 16.7 |
CC(1/2) | 0.999 | 0.827 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 15% (v/w) PEG 3350, 0.1 M succinic acid |