6ZZO
Crystal structure of (R)-3-hydroxybutyrate dehydrogenase from Psychrobacter arcticus complexed with NAD+ and acetoacetate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 175 |
Detector technology | PIXEL |
Collection date | 2018-01-29 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9159 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 68.275, 110.875, 136.903 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.510 - 1.280 |
R-factor | 0.1433 |
Rwork | 0.142 |
R-free | 0.16080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2q2q |
RMSD bond length | 0.007 |
RMSD bond angle | 1.452 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.510 | 1.300 |
High resolution limit [Å] | 1.280 | 1.280 |
Rmerge | 0.063 | 0.807 |
Rpim | 0.027 | 0.343 |
Number of reflections | 266705 | 77229 |
<I/σ(I)> | 15.8 | 2 |
Completeness [%] | 99.5 | 92.8 |
Redundancy | 6.6 | 6.3 |
CC(1/2) | 0.999 | 0.770 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 298 | 45% (v/v) MPD, 0.2 M calcium chloride, 0.1 M Bis Tris |