6ZXZ
Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-12 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.00 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 62.412, 75.267, 52.981 |
Unit cell angles | 90.00, 105.60, 90.00 |
Refinement procedure
Resolution | 46.970 - 2.440 |
R-factor | 0.212 |
Rwork | 0.211 |
R-free | 0.23200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dvz |
RMSD bond length | 0.002 |
RMSD bond angle | 0.531 |
Data reduction software | XDS (31 Jan 2020) |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.590 |
High resolution limit [Å] | 2.440 | 2.440 |
Number of reflections | 17179 | 2748 |
<I/σ(I)> | 6.23 | |
Completeness [%] | 99.5 | |
Redundancy | 3.5 | |
CC(1/2) | 0.990 | 0.359 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | RNA 1 volume Buffer (NaCl 80 mM, KCl 12 mM, MgCl2 20 mM, NaCaco pH7.0 40 mM, MPD 35 %, spermine tetrahydrochloride 12 mM) 1 volume |