6ZV7
Crystal Structure of Thrombin in complex with compound42b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2011-10-17 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.541870 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 69.660, 71.400, 71.470 |
Unit cell angles | 90.00, 99.61, 90.00 |
Refinement procedure
Resolution | 70.470 - 1.940 |
R-factor | 0.1538 |
Rwork | 0.152 |
R-free | 0.19020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Inhouse |
RMSD bond length | 0.019 |
RMSD bond angle | 2.639 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 70.470 | 43.012 | 2.030 |
High resolution limit [Å] | 1.939 | 6.090 | 1.939 |
Rmerge | 0.032 | 0.304 | |
Rmeas | 0.066 | 0.035 | 0.328 |
Rpim | 0.024 | 0.014 | 0.121 |
Number of reflections | 25162 | 863 | 3104 |
<I/σ(I)> | 21.6 | 8.7 | 2.5 |
Completeness [%] | 96.4 | 99.8 | 82.5 |
Redundancy | 7.4 | 7.3 | 7.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 283 | 0.02 M phosphate buffer pH 7.5, 27% PEG 8000, 100 mM NaCl |