6ZUN
Crystal Structure of Thrombin in complex with compound20a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2010-01-29 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.54187 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 69.730, 71.040, 71.790 |
Unit cell angles | 90.00, 99.52, 90.00 |
Refinement procedure
Resolution | 70.800 - 1.793 |
R-factor | 0.2284 |
Rwork | 0.227 |
R-free | 0.26220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse |
RMSD bond length | 0.030 |
RMSD bond angle | 3.009 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.15) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 70.801 | 42.987 | 1.890 |
High resolution limit [Å] | 1.793 | 5.670 | 1.793 |
Rmerge | 0.031 | 0.315 | |
Rmeas | 0.080 | 0.036 | 0.391 |
Rpim | 0.045 | 0.019 | 0.226 |
Number of reflections | 31221 | 944 | 4321 |
<I/σ(I)> | 9.7 | 20.9 | 2.4 |
Completeness [%] | 96.2 | 88.7 | 91.8 |
Redundancy | 2.8 | 3.1 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 283 | 0.02 M phosphate buffer pH 7.5, 27% PEG 8000, 100 mM NaCl |