6ZUH
Crystal Structure of Thrombin in complex with compound17
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2009-10-30 |
Detector | MAR scanner 300 mm plate |
Wavelength(s) | 1.541870 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 70.091, 71.054, 72.620 |
Unit cell angles | 90.00, 100.51, 90.00 |
Refinement procedure
Resolution | 15.000 - 1.700 |
R-factor | 0.1802 |
Rwork | 0.178 |
R-free | 0.21780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse |
RMSD bond length | 0.012 |
RMSD bond angle | 2.342 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.9) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.430 | 20.430 | 1.790 |
High resolution limit [Å] | 1.700 | 5.370 | 1.700 |
Rmerge | 0.047 | 0.025 | 0.265 |
Rmeas | 0.056 | 0.029 | 0.030 |
Rpim | 0.029 | 0.015 | 0.016 |
Total number of observations | 109295 | 4497 | 3367 |
Number of reflections | 31839 | 1227 | 1760 |
<I/σ(I)> | 17.9 | 35.9 | 3.1 |
Completeness [%] | 82.6 | 97 | 31.5 |
Redundancy | 3.4 | 3.7 | 1.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 283 | 0.02 M phosphate buffer pH 7.5, 27% PEG 8000, 100 mM NaCl |