6ZLY
Crystal structure of the complex between PPARgamma LBD and the ligand NV1362 (7a)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.973 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 92.890, 60.070, 118.020 |
Unit cell angles | 90.00, 103.34, 90.00 |
Refinement procedure
Resolution | 57.418 - 1.790 |
R-factor | 0.2368 |
Rwork | 0.234 |
R-free | 0.28040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6qj5 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.288 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | CNS |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.418 | 1.830 |
High resolution limit [Å] | 1.790 | 1.790 |
Rmerge | 0.056 | 1.138 |
Number of reflections | 57534 | 3404 |
<I/σ(I)> | 7.9 | |
Completeness [%] | 96.5 | |
Redundancy | 3.2 | |
CC(1/2) | 0.998 | 0.425 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.8 M SODIUM CITRATE, 0.15 M TRIS, PH 8.0 |