6ZHK
Crystal structure of adenosylmethionine-8-amino-7-oxononanoate aminotransferase from Methanocaldococcus jannaschii DSM 2661
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE ID29 |
| Synchrotron site | ESRF |
| Beamline | ID29 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-12-09 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.969 |
| Spacegroup name | P 1 |
| Unit cell lengths | 61.232, 61.380, 63.069 |
| Unit cell angles | 106.11, 93.48, 96.47 |
Refinement procedure
| Resolution | 60.560 - 1.800 |
| R-factor | 0.1796 |
| Rwork | 0.177 |
| R-free | 0.22170 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3dod |
| RMSD bond length | 0.013 |
| RMSD bond angle | 1.842 |
| Data reduction software | MOSFLM |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 60.560 | 60.560 | 1.840 |
| High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
| Rmerge | 0.102 | 0.049 | 0.431 |
| Rmeas | 0.126 | 0.060 | 0.533 |
| Rpim | 0.072 | 0.034 | 0.309 |
| Total number of observations | 192210 | 1882 | 10451 |
| Number of reflections | 71599 | 625 | 4097 |
| <I/σ(I)> | 6.4 | 12.9 | 2.4 |
| Completeness [%] | 88.5 | 98 | 86.1 |
| Redundancy | 2.7 | 3 | 2.6 |
| CC(1/2) | 0.989 | 0.986 | 0.755 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.2M MgCl2; 0.1M Tris pH 8.5; 19% PEG 3350 |
