6ZEC
Crystal Structure of the Fab Fragment of a Glycosylated Lymphoma Antibody
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-30 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 91.330, 60.790, 84.170 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.610 - 1.650 |
R-factor | 0.17622 |
Rwork | 0.175 |
R-free | 0.20605 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5niv |
RMSD bond length | 0.008 |
RMSD bond angle | 1.461 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.610 | 1.690 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.082 | |
Number of reflections | 57128 | 4169 |
<I/σ(I)> | 13.8 | 1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.4 | 6.4 |
CC(1/2) | 0.990 | 0.490 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 296 | 25 %w/v Polyethylene Glycol 3350 0.200 M Magnesium Chloride 0.100 M bis-Tris pH 5.5 |