Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6ZCN

Crystal structure of YTHDC1 with m6A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2017-10-27
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1
Spacegroup nameP 1 21 1
Unit cell lengths39.690, 103.390, 42.050
Unit cell angles90.00, 106.48, 90.00
Refinement procedure
Resolution40.320 - 1.600
R-factor0.1925
Rwork0.191
R-free0.22480
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4r3h
RMSD bond length0.005
RMSD bond angle0.774
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.3201.700
High resolution limit [Å]1.6001.600
Number of reflections424006707
<I/σ(I)>15.05
Completeness [%]99.0
Redundancy3.24
CC(1/2)0.9990.816
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29525% PEG3350, 0.2M Ammonium Sulphate, 0.1M bis-tris, pH 6.5

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon