6Z3S
Crystal structure of delta466-491 cystathionine beta-synthase from Toxoplasma gondii with O-Acetylserine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 82.700, 82.700, 422.968 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 70.615 - 3.048 |
R-factor | 0.2688 |
Rwork | 0.268 |
R-free | 0.28850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jbq |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 140.989 | 140.989 | 3.325 |
High resolution limit [Å] | 3.048 | 9.363 | 3.065 |
Rmerge | 0.719 | 0.120 | 11.714 |
Rmeas | 0.742 | 0.125 | 12.166 |
Rpim | 0.178 | 0.032 | 3.182 |
Total number of observations | 17369 | 17764 | |
Number of reflections | 26412 | 1320 | 1322 |
<I/σ(I)> | 8.6 | 18.7 | 1.6 |
Completeness [%] | 90.1 | 99.3 | 38.3 |
Redundancy | 16.8 | 13.2 | 13.4 |
CC(1/2) | 0.969 | 0.995 | 0.638 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.1 | 291 | 10% PEG 3350, 0.1M MES pH 6.1 |