6Z34
CymD monoaromatic hydrocarbon channel
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-01 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.98 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 78.890, 87.580, 132.780 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.790 - 2.270 |
R-factor | 0.2154 |
Rwork | 0.212 |
R-free | 0.27130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3brz |
RMSD bond length | 0.008 |
RMSD bond angle | 1.073 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.800 | 2.310 |
High resolution limit [Å] | 2.270 | 2.270 |
Rpim | 0.031 | 0.590 |
Number of reflections | 21321 | 893 |
<I/σ(I)> | 15 | 1.1 |
Completeness [%] | 98.6 | 84.9 |
Redundancy | 6.8 | 4.7 |
CC(1/2) | 0.998 | 0.460 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M bicine/Trizma base pH 8.5, 0.02M mixed monosaccharides, 10-15% PEG 1000/10-15% PEG 3350/12.5% MPD |