6YYU
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese and 2-oxoglutarate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-01 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.97623 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.791, 70.003, 170.870 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 85.440 - 2.110 |
R-factor | 0.2039 |
Rwork | 0.202 |
R-free | 0.23130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jza |
RMSD bond length | 0.017 |
RMSD bond angle | 1.619 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 85.440 | 2.420 |
High resolution limit [Å] | 2.110 | 2.110 |
Rmerge | 0.185 | 1.746 |
Number of reflections | 20459 | 1024 |
<I/σ(I)> | 11 | 1.6 |
Completeness [%] | 90.8 | 56.2 |
Redundancy | 13.2 | |
CC(1/2) | 0.997 | 0.509 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 100 mM HEPES sodium, 10% v/v 2-Propanol, 20% w/v PEG 4000, 1 mM manganese chloride, 2 mM 2-oxoglutarate, 18 mg/ml protein |