6YND
GAPDH purified from the supernatant of HEK293F cells: crystal form 1 of 4.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-22 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.97622 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.885, 124.455, 141.986 |
Unit cell angles | 90.00, 99.39, 90.00 |
Refinement procedure
Resolution | 140.090 - 1.525 |
R-factor | 0.1829 |
Rwork | 0.182 |
R-free | 0.19950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1u8f |
RMSD bond length | 0.008 |
RMSD bond angle | 1.020 |
Data reduction software | PROCOR |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | BUSTER (2.10.3 (19-MAR-2020)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 140.090 | 1.710 |
High resolution limit [Å] | 1.520 | 1.520 |
Rmerge | 0.080 | 1.071 |
Rmeas | 0.090 | 1.161 |
Rpim | 0.030 | 0.444 |
Number of reflections | 295271 | 14763 |
<I/σ(I)> | 11.7 | 1.7 |
Completeness [%] | 69.4 | 12.2 |
Redundancy | 6.9 | 6.8 |
CC(1/2) | 0.997 | 0.608 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 0.1M MORPHEUS Amino acids solution (DL-Glutamic acid; DL-Alanine; Glycine; DL-Lysine; DL-Serine), 0.1M MORPHEUS Buffer System 3 (Tris (base); BICINE), 30% v/v MORPHEUS Precipitant Mix 1 (40% v/v PEG 500* MME; 20 % w/v PEG 20000) |