6YJK
Structure of CYRI-B (FAM49B) from Rhincodon typus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.810, 72.230, 107.810 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.007 - 2.370 |
R-factor | 0.2276 |
Rwork | 0.225 |
R-free | 0.27720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6yjj |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.010 | 60.010 | 2.460 |
High resolution limit [Å] | 2.370 | 8.870 | 2.370 |
Rmerge | 0.127 | 0.045 | 1.030 |
Rmeas | 0.134 | 0.048 | 1.107 |
Rpim | 0.041 | 0.016 | 0.396 |
Total number of observations | 138576 | 2561 | 10214 |
Number of reflections | 13266 | 313 | 1362 |
<I/σ(I)> | 10.1 | 28.5 | 2 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 10.4 | 8.2 | 7.5 |
CC(1/2) | 0.998 | 0.998 | 0.590 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 288.15 | 30% (w/v) glycerol ethoxylate, 0.2 M ammonium acetate and 0.1 M MES pH 6.5 |