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6YHW

Co-crystals in the P212121 space group, of a beta-cyclodextrin spacered by triazole heptyl from alpha-D-mannose, with FimH lectin at 2.00 A resolution.

Replaces:  5AB1
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2015-11-18
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths63.282, 68.072, 95.777
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.348 - 1.962
R-factor0.2151
Rwork0.212
R-free0.26370
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1uwf
RMSD bond length0.006
RMSD bond angle0.861
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.3482.161
High resolution limit [Å]1.9621.962
Rmerge0.1200.667
Number of reflections299887379
<I/σ(I)>7.61.8
Completeness [%]98.998.4
Redundancy3.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5291FimH (10 mg/mL) with beta-cyclodextrin triazole heptyl a-d-mannose (2 mM). Crystals were equilibrated against a well containing sodium citrate tribasic dihydrate buffer (pH 6.5, 1.6M). Prior to data collection, crystals were cryoprotected with use of reservoir solution containing glycerol (20%) and flash-cooled in liquid nitrogen.

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PDB entries from 2024-05-15

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