6Y8Z
Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.07227 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 47.200, 94.210, 146.690 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.930 - 2.050 |
R-factor | 0.1896 |
Rwork | 0.187 |
R-free | 0.23550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6y8y |
RMSD bond length | 0.002 |
RMSD bond angle | 0.496 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3546) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.900 | 2.110 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.124 | 1.023 |
Rmeas | 0.140 | 1.222 |
Rpim | 0.062 | 0.636 |
Number of reflections | 38168 | 2184 |
<I/σ(I)> | 7.5 | 2 |
Completeness [%] | 91.2 | 69 |
Redundancy | 4.8 | 4.5 |
CC(1/2) | 0.948 | 0.429 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.12M calcium acetate, 0.08 M sodium cacodylate pH 6.5, 14.0% (v/v) PEG 8000, 20% (v/v) glycerol |