6Y6U
Structure of Pseudomonas aeruginosa Penicillin-Binding Protein 3 (PBP3) in complex with Compound 6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-13 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.568, 83.128, 90.063 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 61.090 - 1.550 |
R-factor | 0.16 |
Rwork | 0.157 |
R-free | 0.22900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6hzr |
RMSD bond length | 0.011 |
RMSD bond angle | 1.674 |
Data reduction software | XDS (20171111) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.090 | 1.690 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.051 | 1.179 |
Rpim | 0.020 | 0.448 |
Number of reflections | 56715 | 2836 |
<I/σ(I)> | 17.5 | 1.6 |
Completeness [%] | 95.5 | 64.7 |
Redundancy | 7.9 | 7.7 |
CC(1/2) | 0.999 | 0.705 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 293 | 25% (w/v) polyethylene glycol 3 350, 0.1 M Bis-Tris propane pH 7.8 and 1% (w/v) protamine sulphate |