6Y6Q
Structure of Andes virus envelope glycoprotein Gc in postfusion conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9786 |
Spacegroup name | H 3 2 |
Unit cell lengths | 92.647, 92.647, 318.545 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.803 - 2.700 |
R-factor | 0.2368 |
Rwork | 0.234 |
R-free | 0.28690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ljz |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.14rc3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.803 | 39.800 | 2.830 |
High resolution limit [Å] | 2.700 | 8.950 | 2.700 |
Rmerge | 0.140 | 0.073 | 1.279 |
Rmeas | 0.149 | 0.077 | 1.354 |
Rpim | 0.049 | 0.026 | 0.438 |
Total number of observations | 3638 | 18675 | |
Number of reflections | 14898 | 456 | 1949 |
<I/σ(I)> | 8.2 | 26.9 | 1.2 |
Completeness [%] | 99.8 | 96.9 | 99.9 |
Redundancy | 9.4 | 8 | 9.6 |
CC(1/2) | 0.997 | 0.996 | 0.918 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 16% (w/v) PEG 4000, 10% (v/v) 2-propanol, 0.2M (NH4)2SO4, 0.1M Hepes pH 7.5 |