6Y4U
Crystal structure of p38 in complex with SR65
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-01-27 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.019, 74.919, 77.799 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.970 - 1.860 |
R-factor | 0.1924 |
Rwork | 0.190 |
R-free | 0.24110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lar |
RMSD bond length | 0.016 |
RMSD bond angle | 1.652 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 77.799 | 77.799 | 1.960 |
High resolution limit [Å] | 1.860 | 5.880 | 1.860 |
Rmerge | 0.043 | 0.872 | |
Rmeas | 0.062 | 0.047 | 0.956 |
Rpim | 0.025 | 0.020 | 0.387 |
Total number of observations | 194008 | 6388 | 27409 |
Number of reflections | 32347 | 1166 | 4598 |
<I/σ(I)> | 14.6 | 34.3 | 2 |
Completeness [%] | 97.9 | 99.5 | 96.9 |
Redundancy | 6 | 5.5 | 6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 277.15 | 17.5% PEG Smear Medium, 0.1M MES pH 6.2 |