6Y4E
X-ray structure of the Zn-dependent receptor-binding domain of Proteus mirabilis MR/P fimbrial adhesin MrpH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-07-17 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 25.561, 53.139, 40.158 |
Unit cell angles | 90.00, 102.83, 90.00 |
Refinement procedure
Resolution | 39.150 - 1.020 |
R-factor | 0.1081 |
Rwork | 0.107 |
R-free | 0.12820 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.077 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | SHELXDE |
Refinement software | PHENIX (1.18rc1_3777) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.150 | 1.056 |
High resolution limit [Å] | 1.020 | 1.020 |
Rmerge | 0.046 | 0.549 |
Rmeas | 0.052 | 0.629 |
Rpim | 0.023 | 0.300 |
Number of reflections | 52285 | 20712 |
<I/σ(I)> | 15 | 2.31 |
Completeness [%] | 98.2 | 95.05 |
Redundancy | 4.6 | 4.1 |
CC(1/2) | 0.999 | 0.878 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | Morpheus HT screen (Molecular Dimensions, UK) condition C9 (0.03 M sodium nitrate, 0.03 M sodium phosphate dibasic and 0.03 M ammonium sulfate, 0.1 bicine/Trizma base pH 8.5, 10% w/v PEG 20000 and 20% v/v PEG MME 550). |