6Y41
Fibrinogen-like globe domain of human ANGPTL2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-15 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 153.940, 154.860, 172.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 70.630 - 1.790 |
R-factor | 0.1931 |
Rwork | 0.192 |
R-free | 0.21470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6qnv |
RMSD bond length | 0.006 |
RMSD bond angle | 0.887 |
Data reduction software | xia2 |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 75.300 | 75.360 | 1.820 |
High resolution limit [Å] | 1.790 | 4.860 | 1.790 |
Rmeas | 0.140 | 0.053 | 2.941 |
Rpim | 0.038 | 0.014 | 0.798 |
Total number of observations | 5302074 | 268115 | 255516 |
Number of reflections | 384504 | 20029 | 19082 |
<I/σ(I)> | 11.3 | 37.7 | 0.9 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 13.8 | 13.4 | 13.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | Morpheus A12 (0.06M Divalents, 0.1M Buffer System 3 pH 8.5, 50% v/v Precipitant Mix 4) + 25 mM CaCl2. |