6Y3A
Structure of Plasmodium vivax phosphoglycerate kinase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-10-20 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.92818 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 42.340, 84.120, 125.520 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.879 - 1.490 |
R-factor | 0.1648 |
Rwork | 0.163 |
R-free | 0.19530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ltk |
Data reduction software | xia2 |
Data scaling software | Aimless (0.5.15) |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 69.880 | 69.880 | 1.530 |
High resolution limit [Å] | 1.490 | 6.660 | 1.490 |
Rmerge | 0.062 | 0.034 | 1.141 |
Rmeas | 0.068 | 0.038 | 1.311 |
Rpim | 0.027 | 0.015 | 0.633 |
Total number of observations | 428316 | ||
Number of reflections | 74103 | 957 | 5398 |
<I/σ(I)> | 14 | ||
Completeness [%] | 99.8 | 99.2 | 99.5 |
Redundancy | 5.8 | 5.5 | 4.1 |
CC(1/2) | 0.999 | 0.998 | 0.508 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.4 | 291 | 20% PEG-MME 2K, 0.15 M KBr |