6Y05
Crystal structure of the cAMP-dependent protein kinase A cocrystallized with adenine and PKI (5-24)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-12 |
Detector | DECTRIS PILATUS3 S 2M |
Wavelength(s) | 0.918409 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.926, 75.122, 80.792 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.920 - 1.700 |
R-factor | 0.1783 |
Rwork | 0.177 |
R-free | 0.20480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6f14 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.816 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.920 | 1.800 |
High resolution limit [Å] | 1.696 | 1.700 |
Number of reflections | 49558 | 7650 |
<I/σ(I)> | 22.06 | 3.82 |
Completeness [%] | 99.3 | 96.1 |
Redundancy | 6.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 277 | 100 mM MES-BIS-Tris-Buffer, 1 mM dithiothreitol, 0.1 mM sodium EDTA, 75 mM LiCl, 0.2 Mega 8, 10mM adenine in DMSO, 0.5 mM PKI (5-24) and 23 % methanol (v/v)0.004 mL drop volume, 0.5 mL reservoir volume |