6XTF
Crystal structure a Thioredoxin Reductase from Gloeobacter violaceus bound to its electron donor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-29 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.91589 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 166.741, 181.312, 80.369 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 83.370 - 2.230 |
R-factor | 0.2021 |
Rwork | 0.201 |
R-free | 0.23150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5j60 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.173 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3689) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 83.400 | 2.470 |
High resolution limit [Å] | 2.230 | 2.230 |
Rmerge | 0.298 | 1.673 |
Rmeas | 0.310 | 1.763 |
Rpim | 0.085 | 0.549 |
Number of reflections | 40062 | 2004 |
<I/σ(I)> | 9.3 | 1.6 |
Completeness [%] | 92.7 | 64.5 |
Redundancy | 13.1 | 10.2 |
CC(1/2) | 0.989 | 0.584 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 40% PEG-300 100 mM Sodium cacodylate-HCl, pH 6.5 200 mM Sodium acetate |