6XQ9
Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 13
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-07-24 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97857 |
Spacegroup name | P 62 |
Unit cell lengths | 102.112, 102.112, 102.179 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.060 - 2.300 |
R-factor | 0.2159 |
Rwork | 0.215 |
R-free | 0.23880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lp4 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.327 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmeas | 0.063 | 0.166 |
Rpim | 0.019 | 0.050 |
Number of reflections | 52826 | 5258 |
<I/σ(I)> | 29.9 | 18.38 |
Completeness [%] | 99.7 | 98.43 |
Redundancy | 5.7 | 5.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 2.5 M NaOAc (pH 7.5) |