6XQ5
Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-15 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 62 |
Unit cell lengths | 101.735, 101.735, 101.812 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.500 - 1.800 |
R-factor | 0.1743 |
Rwork | 0.173 |
R-free | 0.19630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lp4 |
RMSD bond length | 0.016 |
RMSD bond angle | 1.359 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.860 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmeas | 0.067 | 0.356 |
Rpim | 0.024 | 0.128 |
Number of reflections | 55196 | 5530 |
<I/σ(I)> | 15.6 | 7.96 |
Completeness [%] | 97.2 | |
Redundancy | 4.4 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 2.5 M NaOAc (pH 7.5) |