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6XQ5

Receptor for Advanced Glycation End Products VC1 domain in complex with Fragment 1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2016-02-15
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 62
Unit cell lengths101.735, 101.735, 101.812
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.500 - 1.800
R-factor0.1743
Rwork0.173
R-free0.19630
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4lp4
RMSD bond length0.016
RMSD bond angle1.359
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.860
High resolution limit [Å]1.8001.800
Rmeas0.0670.356
Rpim0.0240.128
Number of reflections551965530
<I/σ(I)>15.67.96
Completeness [%]97.2
Redundancy4.44.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2772.5 M NaOAc (pH 7.5)

219869

PDB entries from 2024-05-15

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