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6XNE

GCN4-p1 Peptide Trimer with p-methylphenylalanine residue at position 16 (me-F16)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-003
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-28
DetectorDECTRIS PILATUS 200K
Wavelength(s)1.54
Spacegroup nameC 1 2 1
Unit cell lengths60.138, 34.891, 47.041
Unit cell angles90.00, 100.63, 90.00
Refinement procedure
Resolution20.100 - 1.960
R-factor0.2247
Rwork0.210
R-free0.30860
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1swi
RMSD bond length0.008
RMSD bond angle0.893
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.1002.037
High resolution limit [Å]1.9601.966
Rmerge0.0510.329
Rmeas0.0720.465
Rpim0.0510.329
Number of reflections135821201
<I/σ(I)>19.023.26
Completeness [%]99.597.68
Redundancy21.8
CC(1/2)0.9920.623
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7298Crystallization drops were prepared by mixing 2 uL of stock peptide solution with 2 uL of mother liquor and allowed to equilibrate at 298 K over a well containing 500 uL of mother liquor. The stock peptide solution (total concentration 1.5 mM) was prepared by mixing 2:1 ratios of the A16 peptide with me-F16 in 10 mM potassium phosphate, 100 mM potassium chloride pH 7.0.

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PDB entries from 2025-12-10

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