Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6XJL

Structure of the SM protein Vps45

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]100
Detector technologyPIXEL
Collection date2015-11-06
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9782
Spacegroup nameP 21 21 21
Unit cell lengths68.489, 93.956, 102.615
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.650 - 2.000
R-factor0.1814
Rwork0.179
R-free0.22100
Structure solution methodSAD
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHELXDE
Refinement softwarePHENIX (1.17_3644)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]35.00035.0002.030
High resolution limit [Å]2.0005.4202.000
Rmerge0.0820.0350.708
Rmeas0.0920.0400.807
Rpim0.0420.0190.383
Total number of observations209783
Number of reflections4535624742211
<I/σ(I)>6.1
Completeness [%]99.699.698.9
Redundancy4.64.34.2
CC(1/2)0.9980.743
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62930.2 M potassium bromide, 0.2 M potassium thiocyanate, 0.1 M sodium acetate pH 6.0, 3% (w/v) polyglycolide, 5% (w/v) polyethylene glycol 3350

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon