6XJL
Structure of the SM protein Vps45
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9782 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.489, 93.956, 102.615 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.650 - 2.000 |
R-factor | 0.1814 |
Rwork | 0.179 |
R-free | 0.22100 |
Structure solution method | SAD |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SHELXDE |
Refinement software | PHENIX (1.17_3644) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.000 | 35.000 | 2.030 |
High resolution limit [Å] | 2.000 | 5.420 | 2.000 |
Rmerge | 0.082 | 0.035 | 0.708 |
Rmeas | 0.092 | 0.040 | 0.807 |
Rpim | 0.042 | 0.019 | 0.383 |
Total number of observations | 209783 | ||
Number of reflections | 45356 | 2474 | 2211 |
<I/σ(I)> | 6.1 | ||
Completeness [%] | 99.6 | 99.6 | 98.9 |
Redundancy | 4.6 | 4.3 | 4.2 |
CC(1/2) | 0.998 | 0.743 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 0.2 M potassium bromide, 0.2 M potassium thiocyanate, 0.1 M sodium acetate pH 6.0, 3% (w/v) polyglycolide, 5% (w/v) polyethylene glycol 3350 |