6XD1
Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-640
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-09-02 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 161.533, 175.198, 57.748 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.748 - 1.954 |
R-factor | 0.1762 |
Rwork | 0.175 |
R-free | 0.20420 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.008 |
RMSD bond angle | 0.910 |
Data reduction software | XDS |
Data scaling software | SCALA |
Refinement software | BUSTER (2.11.7 (19-MAR-2020)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.380 | 59.380 | 1.952 |
High resolution limit [Å] | 1.945 | 9.018 | 1.945 |
Rmerge | 0.046 | 0.020 | 0.629 |
Rmeas | 0.050 | 0.022 | 0.680 |
Rpim | 0.019 | 0.008 | 0.256 |
Number of reflections | 60534 | 701 | 600 |
<I/σ(I)> | 24.7 | ||
Completeness [%] | 99.9 | 100 | 99.7 |
Redundancy | 6.6 | 5.6 | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.1 M Tris-HCl, pH 8.2 to 8.4, 26 to 28 % PEG 550 MME |