6XB9
Crystal structure of Azotobacter vinelandii 3-mercaptopropionic acid dioxygenase in complex with 3-hydroxypropionic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979339 |
Spacegroup name | P 31 |
Unit cell lengths | 178.219, 178.219, 75.915 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.260 - 2.250 |
R-factor | 0.1971 |
Rwork | 0.196 |
R-free | 0.22560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tlf |
RMSD bond length | 0.006 |
RMSD bond angle | 1.272 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.390 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.150 | 1.642 |
Number of reflections | 127973 | 20673 |
<I/σ(I)> | 6.35 | 0.78 |
Completeness [%] | 99.9 | |
Redundancy | 4.4 | |
CC(1/2) | 0.993 | 0.484 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 295 | 100 mM MES-NaOH, pH 6, 30 % w/v poly(acrylic acid sodium salt) 5100, 10 % v/v ethanol, 50 mM MgCl2 |