6X9M
3-O-methyl-glucose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | CLSI BEAMLINE 08ID-1 |
| Synchrotron site | CLSI |
| Beamline | 08ID-1 |
| Temperature [K] | 93 |
| Detector technology | PIXEL |
| Collection date | 2019-12-07 |
| Detector | DECTRIS PILATUS3 S 6M |
| Wavelength(s) | 0.97949 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 45.200, 50.330, 79.140 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 42.470 - 1.000 |
| R-factor | 0.143 |
| Rwork | 0.142 |
| R-free | 0.15910 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5j6y |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.321 |
| Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 42.470 | 1.000 |
| High resolution limit [Å] | 0.970 | 0.970 |
| Rmerge | 0.058 | |
| Rpim | 0.534 | |
| Number of reflections | 101513 | 6335 |
| <I/σ(I)> | 19.9 | |
| Completeness [%] | 94.6 | |
| Redundancy | 11.1 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | MICROBATCH | 7 | 298 | 0.2 M calcium chloride, 0.1 M HEPES (pH 7), 20% (v/v) polyethylene glycol 3350 and ~30 % (w/v) 3-O-methyl-glucose |
