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6X8D

Arabinose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]93
Detector technologyPIXEL
Collection date2020-02-05
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.97949
Spacegroup nameP 21 21 21
Unit cell lengths45.120, 50.710, 79.620
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.770 - 1.000
R-factor0.1471
Rwork0.146
R-free0.16590
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5j6y
RMSD bond length0.017
RMSD bond angle1.672
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.7700.990
High resolution limit [Å]0.9600.960
Rmeas0.067
Rpim0.685
Number of reflections1064256942
<I/σ(I)>19.1
Completeness [%]95.2
Redundancy11
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH72980.2 M calcium chloride, 0.1 M HEPES (pH 7), 20% (v/v) polyethylene glycol 3350 and 30 % (w/v) arabinose

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PDB entries from 2024-05-15

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