6X5D
Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-T modification
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 99 |
Detector technology | CCD |
Collection date | 2019-04-26 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.969 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 25.350, 40.018, 65.708 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.180 - 1.150 |
R-factor | 0.2078 |
Rwork | 0.207 |
R-free | 0.22460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 355d |
RMSD bond length | 0.019 |
RMSD bond angle | 2.080 |
Data reduction software | HKL-2000 |
Data scaling software | SCALA |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.170 |
High resolution limit [Å] | 1.150 | 1.150 |
Rmerge | 0.038 | 0.249 |
Rmeas | 0.040 | 0.262 |
Rpim | 0.011 | 0.077 |
Number of reflections | 24146 | 1078 |
<I/σ(I)> | 45 | |
Completeness [%] | 98.6 | 93.5 |
Redundancy | 13.5 | 10.8 |
CC(1/2) | 1.000 | 0.982 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 298.15 | 2-Methyl-2,4-pentanediol, Sodium cacodylate trihydrate, Spermine tetrahydrochloride, Sodium chloride, Potassium chloride, Magnesium chloride hexahydrate |