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6X3A

Crystal structure of the FN4-FN6 domains of human PTPRD

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-BM
Synchrotron siteAPS
Beamline22-BM
Temperature [K]100
Detector technologyCCD
Collection date2015-02-15
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)1.00
Spacegroup nameI 1 2 1
Unit cell lengths95.060, 34.570, 109.199
Unit cell angles90.00, 90.33, 90.00
Refinement procedure
Resolution34.060 - 1.770
R-factor0.1975
Rwork0.195
R-free0.23950
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Dlar FN5
RMSD bond length0.006
RMSD bond angle0.824
Data reduction softwareMOSFLM
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX (1.18.1_3865)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.800
High resolution limit [Å]1.7701.770
Rmerge0.0770.679
Rmeas0.0880.818
Rpim0.0460.453
Number of reflections351361959
<I/σ(I)>13.52.4
Completeness [%]99.5
Redundancy7.2
CC(1/2)0.9980.696
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293200 mM Magnesium formate, 20% (w/v) PEG 3350

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