6X3A
Crystal structure of the FN4-FN6 domains of human PTPRD
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 22-BM |
| Synchrotron site | APS |
| Beamline | 22-BM |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2015-02-15 |
| Detector | MARMOSAIC 225 mm CCD |
| Wavelength(s) | 1.00 |
| Spacegroup name | I 1 2 1 |
| Unit cell lengths | 95.060, 34.570, 109.199 |
| Unit cell angles | 90.00, 90.33, 90.00 |
Refinement procedure
| Resolution | 34.060 - 1.770 |
| R-factor | 0.1975 |
| Rwork | 0.195 |
| R-free | 0.23950 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | Dlar FN5 |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.824 |
| Data reduction software | MOSFLM |
| Data scaling software | Aimless |
| Phasing software | PHENIX |
| Refinement software | PHENIX (1.18.1_3865) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 1.800 |
| High resolution limit [Å] | 1.770 | 1.770 |
| Rmerge | 0.077 | 0.679 |
| Rmeas | 0.088 | 0.818 |
| Rpim | 0.046 | 0.453 |
| Number of reflections | 35136 | 1959 |
| <I/σ(I)> | 13.5 | 2.4 |
| Completeness [%] | 99.5 | |
| Redundancy | 7.2 | |
| CC(1/2) | 0.998 | 0.696 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 293 | 200 mM Magnesium formate, 20% (w/v) PEG 3350 |






