6X3A
Crystal structure of the FN4-FN6 domains of human PTPRD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-02-15 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 95.060, 34.570, 109.199 |
Unit cell angles | 90.00, 90.33, 90.00 |
Refinement procedure
Resolution | 34.060 - 1.770 |
R-factor | 0.1975 |
Rwork | 0.195 |
R-free | 0.23950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Dlar FN5 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.824 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.1_3865) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.800 |
High resolution limit [Å] | 1.770 | 1.770 |
Rmerge | 0.077 | 0.679 |
Rmeas | 0.088 | 0.818 |
Rpim | 0.046 | 0.453 |
Number of reflections | 35136 | 1959 |
<I/σ(I)> | 13.5 | 2.4 |
Completeness [%] | 99.5 | |
Redundancy | 7.2 | |
CC(1/2) | 0.998 | 0.696 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 200 mM Magnesium formate, 20% (w/v) PEG 3350 |