6X1R
Crystal Structure of Choanoflagellate (Monosiga brevicollis) Dlg1 PDZ2 (mbDLG-2) in spacegroup P212121
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2020-03-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.977410 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 35.091, 56.107, 57.918 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.299 - 1.300 |
R-factor | 0.1956 |
Rwork | 0.195 |
R-free | 0.20720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2byg |
RMSD bond length | 0.005 |
RMSD bond angle | 0.769 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.300 | 1.470 | 1.380 |
High resolution limit [Å] | 1.300 | 1.380 | 1.300 |
Number of reflections | 28809 | 8241 | 8463 |
<I/σ(I)> | 24.04 | 5.42 | 2.48 |
Completeness [%] | 99.4 | 99.9 | 96.5 |
Redundancy | 6.04 | 6 | 3.61 |
CC(1/2) | 1.000 | 0.866 | 0.866 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 298 | 0.2 M sodium malonate, pH 5, 20% w/v PEG3350 |