6X1I
Two-Component D3 Assembly Constructed by Fusing Symmetric Oligomers to Coiled Coils
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-06 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9790 |
Spacegroup name | P 43 3 2 |
Unit cell lengths | 146.340, 146.340, 146.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 84.490 - 4.320 |
R-factor | 0.2796 |
Rwork | 0.278 |
R-free | 0.29260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1wy1 3dxo |
RMSD bond length | 0.004 |
RMSD bond angle | 0.920 |
Data reduction software | XDS (VERSION Oct 15, 2015) |
Data scaling software | XSCALE (VERSION Oct 15, 2015) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (dev 3724) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 84.500 | 84.500 | 4.440 |
High resolution limit [Å] | 4.320 | 19.330 | 4.320 |
Rmerge | 0.095 | 0.045 | 2.374 |
Rmeas | 0.099 | 0.048 | 2.449 |
Number of reflections | 3945 | 69 | 281 |
<I/σ(I)> | 14.4 | 46.8 | 1.3 |
Completeness [%] | 99.7 | 97.2 | 96.9 |
Redundancy | 17.657 | 11.739 | 16.765 |
CC(1/2) | 1.000 | 1.000 | 0.411 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277.15 | Reagent Well: - 10ul of Silver Bullets additive screen reagent B9: 0.25% w/v Hexamminecobalt(III) chloride, 0.25% w/v Salicylamide, 0.25% w/v Sulfanilamide, 0.25% w/v Vanillic acid, 0.02 M HEPES sodium pH 6.8 - 90ul of crystallization reagent: 0.10 M Sodium Acetate pH 5.4, 66% MPD Drop: - 2:1 protein sample to well reagent ratio - Protein sample: 2.8mg/ml of purified protein in 0.5M NaCl, 5% Glycerol, 2.8mM beta-mercaptoethanol, 50 mM Tris pH 7.5, 5mM MgCl2 sample buffer |