6WZ1
Mn-bound structure of an engineered protein trimer, TriCyt3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-09 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.771140 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.759, 77.392, 47.940 |
Unit cell angles | 90.00, 110.70, 90.00 |
Refinement procedure
Resolution | 34.789 - 1.999 |
R-factor | 0.1812 |
Rwork | 0.176 |
R-free | 0.22920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bc5 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.040 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14-3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.789 | 2.071 |
High resolution limit [Å] | 1.999 | 1.999 |
Rmerge | 0.079 | 0.233 |
Rmeas | 0.086 | 0.254 |
Rpim | 0.033 | 0.099 |
Number of reflections | 21269 | 2105 |
<I/σ(I)> | 18.9 | 8.26 |
Completeness [%] | 98.1 | |
Redundancy | 6.6 | |
CC(1/2) | 0.997 | 0.980 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 30% PEG 400, 0.2 M CaCl2, 0.1 M BIS-TRIS (pH 6.5) |