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6WVS

Hyperstable de novo TIM barrel variant DeNovoTIM15

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.1
Synchrotron siteALS
Beamline8.2.1
Temperature [K]100
Detector technologyCCD
Collection date2017-07-21
DetectorADSC QUANTUM 315r
Wavelength(s)1.000
Spacegroup nameP 32
Unit cell lengths53.199, 53.199, 64.270
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution37.440 - 2.202
R-factor0.2025
Rwork0.192
R-free0.20460
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Rosetta design model of protein
RMSD bond length0.003
RMSD bond angle0.509
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.18rc2_3793)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.4402.281
High resolution limit [Å]2.2022.202
Rmerge0.2042.759
Rmeas0.2162.943
Rpim0.0721.015
Number of reflections102327829
<I/σ(I)>8.322.31
Completeness [%]99.597.44
Redundancy9.18.2
CC(1/2)0.9880.558
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.529310% w/v PEG 20 000, 20% v/v PEG MME 550, 0.02 M each of each 1,6-hexanediol, 1-butanol, (RS)-1,2-propanediol, 2-propanol, 1,4-butanediol, 1,3-propanediol, 0.1 M bicine/Trizma base pH 8.5

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PDB entries from 2024-05-15

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