6WVS
Hyperstable de novo TIM barrel variant DeNovoTIM15
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-21 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.000 |
Spacegroup name | P 32 |
Unit cell lengths | 53.199, 53.199, 64.270 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.440 - 2.202 |
R-factor | 0.2025 |
Rwork | 0.192 |
R-free | 0.20460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Rosetta design model of protein |
RMSD bond length | 0.003 |
RMSD bond angle | 0.509 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.18rc2_3793) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.440 | 2.281 |
High resolution limit [Å] | 2.202 | 2.202 |
Rmerge | 0.204 | 2.759 |
Rmeas | 0.216 | 2.943 |
Rpim | 0.072 | 1.015 |
Number of reflections | 10232 | 7829 |
<I/σ(I)> | 8.32 | 2.31 |
Completeness [%] | 99.5 | 97.44 |
Redundancy | 9.1 | 8.2 |
CC(1/2) | 0.988 | 0.558 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 10% w/v PEG 20 000, 20% v/v PEG MME 550, 0.02 M each of each 1,6-hexanediol, 1-butanol, (RS)-1,2-propanediol, 2-propanol, 1,4-butanediol, 1,3-propanediol, 0.1 M bicine/Trizma base pH 8.5 |